Development and Performance Evaluation of a Cryptosporidium parvum and Cryptosporidium hominis Specific Real-Time PCR Assays
微小隐孢子虫和人隐孢子虫特异性实时PCR检测方法的建立及性能评价
To improve the specificity of
detecting Cryptosporidium in water, quantitative real-time PCR (qPCR) assays were
developed to detect and quantitate Cryptosporidium spp. oocysts in environmental
samples; however, these approaches have varying degrees of specificity and sensitivity
and were not specific to C. hominis or C. parvum. Therefore, the goal of this
project was to improve upon current qPCR assays to specifically detect C. parvum, C.
hominis, or all Cryptosporidium spp.
The first goal of the experimental approach of this project was the development of three qPCR assays. The first
is a "pan-Crypto" qPCR assay that detects all Cryptosporidium species, while the second
and third assays specifically detect C. parvum or C. hominis oocysts, respectively.
Preliminary results showed that the pan-Crypto qPCR assay can easily detect genomic
DNA extracts from human infectious and animal forms of Cryptosporidium spp. like C.
canis, C. felis, C. hominis, C. meleagridis, C. muris and C. parvum. Additional
experiments further revealed that the pan-Crypto qPCR can detect levels as low as one
oocyst in reagent grade water. For the other qPCR assays developed, the C. parvum
specific qPCR only detected C. parvum oocysts and not C. canis, C. felis, C. hominis, C.
meleagridis, or C. muris. Similarly, the C. hominis specific qPCR assay only detected C.
hominis oocysts and not C. canis, C. felis, C. meleagridis, C. muris, or, C. parvum.
Additional experiments that further evaluate limits of detection and specificities of all
three assays in detecting oocysts spiked in environmental samples are discussed. The second goal of the experimental approach of this project was to determine the variations of qPCR results
generated from using different real-time PCR machines. To date, three real-time PCR
machines, ABI 7000, ABI 7900, and Roche LC 480 Smart Cycler, were compared.
Preliminary results indicated that all three machines tested were able to detect low levels
of template DNA, equivalent to one oocyst, and no significant differences were observed.
Performance results from other real-time PCR machines will also be presented as they
become available. Includes 11 references, abstract only.